BDR-
From what I've read, on this car the VATS disables both the fuel pump and the starter. I know that the VATS module was faulty because before we replaced it with out homemade chip, the car would not crank at all. I know that this was the initial problem because the "security" light on the dash gave every indication that it was the VATS module that was faulty. When I turn the key to "on" I can hear the fuel pump being primed. I have checked the relay, and the fuel pump was recently replaced.
Also, when I said the ECM output wire, I did not meant the wire on my homemade chip. I meant the wire that the ECM output connects to. I have read that in order to check the proper functionality of the ECM, this wire should have a voltage reading between 4.5-5 volts... and it does. I have checked the frequency output of everything on my circuit with a multimeter, and I have hit a roadblock.